If you are not an Administrator user, get assistance with getting administrator privileges so you If you are an Administrator user, double-click on theĬlustal installer. Clustal requires administrator privileges in order to install. To install Clustal on your computer, follow these steps:Ģ. You will be prompted for a destination location for the installation. If you are not an Administrator user, get assistance with getting administrator privileges soģ. If you are an Administrator user, double-click on theĬorrect Tablet installer. Tablet requires administrator privileges in order to install. Tablet_windows_x86 installer is for 32-bit systems.Ģ. The tablet_windows_圆4 installer is for 64-bit systems and the To install the Tablet viewer on your computer, follow these steps:ġ. If Java is not installed on your computer, you can download it from Versionġ.8 or newer is needed on Windows 8.1. Note that Java version 1.7 or newer is needed in order to use FastQC with Sequencher on Windows 7. When the installation is complete, FastQC is readyĥ. A new window appears which shows the progress of the installer. Accept the installation defaults including the license agreement terms.Ĥ. Extract/unzip the archive and open the installer folder if it is not opened for you. Download the FastQC Installer zip archive from the Gene Codes website at. To install FastQC on your computer, follow these steps:ġ. GSNAP (64-bit systems only), Maq, Maqview, MUSCLE, Samtools, and Velvet are ready for use in When the installation is complete, BWA-MEM, Accept the installation defaults including the licenseĤ. Double-click on DNA-SeqToolsInstaller.exe. It will contain DNASeqToolsInstaller.exe, Tablet, src, links, and ClustalW2 folders, and a License.txt file.ģ. SYSTEMS ONLY SO THIS INSTALLER WILL NOT INSTALL IT ON 32-BIT SYSTEMS.Ģ. NOTE THAT GSNAP IS SUPPORTED AND INSTALLABLE ON 64-BIT That location is Programs Files or Program Files (x86)/GeneĬodes/Sequencher External Tools. The Windows installer will place BWA-MEM, GSNAP, Maq, Maqview, MUSCLE, Samtools, and VelvetĪnd their related files where they need to be. INSTALLING EXTERNAL APPLICATIONS ON WINDOWS Quick and Easy Set Up for NGS Aligners and Assemblers Once FastQC is installed, you can generate FastQ Quality Control Reports TheįastQC installer is also a separate installer. The Tablet viewer is a separate installer but only takes moments to install. The instructions which follow show you how to use the all-in-one installers which will place almost everything you need to Tools, you will also need to install Tablet-a third-party graphical viewer. Have Cygwin, a Unix emulation environment, installed in order to run the alignment tools. We have built native binaries for Windows, so that there is no longer any need to The BWA-MEM, GSNAP, Maq, MUSCLE, and Velvet algorithms were written to run on Unix-based systems. The MUSCLE external algorithm, while not an NGS algorithm, has also been added to Sequencher. These algorithms,īWA-MEM, GSNAP, Maq, and Velvet, join Clustal (the very first external algorithm to be added to Sequencher to align the large quantity of data produced by Next-Generation sequencing machines. With the advent of Next-Generation sequencing, several new external alignment algorithms have been integrated into 5 Installing the Tablet Viewer on Mac OS X. 4 Installing External Applications on Mac OS X. 3 Installing the Tablet Viewer on Windows. 3 Installing External Applications on Windows. Quick and Easy Set Up for NGS Aligners and Assemblers.
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